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Literature record

A homozygous double mutation in SMN1: a complicated genetic diagnosis of SMA.

PMID 24498607 | PMCID PMC3865576 | DOI 10.1002/mgg3.10 · Molecular genetics & genomic medicine · 2013 · View on PubMed ↗

Spinal muscular atrophy (SMA), the most common autosomal recessive cause of infant death, is typically diagnosed by determination of SMN1 copy number. Approximately 3-5% of patients with SMA retain at least one copy of the SMN1 gene carrying pathogenic insertions, deletions, or point mutations. We report a patient with SMA who is homozygous for two mutations carried in cis: an 8 bp duplication (c.48_55dupGGATTCCG; p.Val19fs*24) and a point mutation (c.662C>T; p.Pro221Leu). The consanguineous parents carry the same two mutations within one SMN1 gene copy. We demonstrate that a more accurate diagnosis of the disease is obtained through a novel diagnostic assay and development of a capillary electrophoresis method to determine the copy number of their mutant alleles. This illustrates the complexity of SMN mutations and suggests additional testing (gene sequencing) may be appropriate when based on family lines.

Validated evidence

TypeEntitySource evidenceConfidenceExtractor
geneSMN1“A homozygous double mutation in SMN1: a complicated genetic diagnosis of SMA.”0.98hgnc_dict_v1
phenotypespinal muscular atrophy“A homozygous double mutation in SMN1: a complicated genetic diagnosis of SMA.”0.93phenotype_alias_lexicon_v2
populationPopulation“The consanguineous parents carry the same two mutations within one SMN1 gene copy.”0.80saudi_context_rules_v1
variantc.48_55dupGGATTCCG“We report a patient with SMA who is homozygous for two mutations carried in cis: an 8 bp duplication (c.48_55dupGGATTCCG; p.Val19fs*24) and a point mutation (c.662C>T; p.Pro221Leu).”0.95hgvs_regex_v1
variantc.662C>T“We report a patient with SMA who is homozygous for two mutations carried in cis: an 8 bp duplication (c.48_55dupGGATTCCG; p.Val19fs*24) and a point mutation (c.662C>T; p.Pro221Leu).”0.95hgvs_regex_v1
variantp.Pro221Leu“We report a patient with SMA who is homozygous for two mutations carried in cis: an 8 bp duplication (c.48_55dupGGATTCCG; p.Val19fs*24) and a point mutation (c.662C>T; p.Pro221Leu).”0.95hgvs_regex_v1