Gene Ontology and Expression Studies of Strigolactone Analogues on a Hepatocellular Carcinoma Cell Line.
PMID 31482051 | PMCID PMC6701435 | DOI 10.1155/2019/1598182 · Analytical cellular pathology (Amsterdam) · 2019 · View on PubMed ↗
Human hepatocellular carcinoma (HCC) is the most common and recurrent type of primary adult liver cancer without any effective therapy. Plant-derived compounds acting as anticancer agents can induce apoptosis by targeting several signaling pathways. Strigolactone (SL) is a novel class of phytohormone, whose analogues have been reported to possess anticancer properties on a panel of human cancer cell lines through inducing cell cycle arrest, destabilizing microtubular integrity, reducing damaged in the DNA repair machinery, and inducing apoptosis. In our previous study, we reported that a novel SL analogue, TIT3, reduces HepG2 cell proliferation, inhibits cell migration, and induces apoptosis. To decipher the mechanisms of TIT3-induced anticancer activity in HepG2, we performed RNA sequencing and the differential expression of genes was analyzed using different tools. RNA-Seq data showed that the genes responsible for microtubule organization such as TUBB, BUB1B, TUBG2, TUBGCP6, TPX2, and MAP7 were significantly downregulated. Several epigenetic modulators such as UHRF1, HDAC7, and DNMT1 were also considerably downregulated, and this effect was associated with significant upregulation of various proapoptotic genes including CASP3, TNF-α, CASP7, and CDKN1A (p21). Likewise, damaged DNA repair genes such as RAD51, RAD52, and DDB2 were also significantly downregulated. This study indicates that TIT3-induced antiproliferative and proapoptotic activities on HCC cells could involve several signaling pathways. Our results suggest that TIT3 might be a promising drug to treat HCC.
Validated evidence
| Type | Entity | Source evidence | Confidence | Extractor |
|---|---|---|---|---|
| gene | TUBB | “RNA-Seq data showed that the genes responsible for microtubule organization such as TUBB, BUB1B, TUBG2, TUBGCP6, TPX2, and MAP7 were significantly downregulated.” | 0.98 | hgnc_dict_v1 |
| gene | BUB1B | “RNA-Seq data showed that the genes responsible for microtubule organization such as TUBB, BUB1B, TUBG2, TUBGCP6, TPX2, and MAP7 were significantly downregulated.” | 0.98 | hgnc_dict_v1 |
| gene | TUBG2 | “RNA-Seq data showed that the genes responsible for microtubule organization such as TUBB, BUB1B, TUBG2, TUBGCP6, TPX2, and MAP7 were significantly downregulated.” | 0.98 | hgnc_dict_v1 |
| gene | TUBGCP6 | “RNA-Seq data showed that the genes responsible for microtubule organization such as TUBB, BUB1B, TUBG2, TUBGCP6, TPX2, and MAP7 were significantly downregulated.” | 0.98 | hgnc_dict_v1 |
| gene | TPX2 | “RNA-Seq data showed that the genes responsible for microtubule organization such as TUBB, BUB1B, TUBG2, TUBGCP6, TPX2, and MAP7 were significantly downregulated.” | 0.98 | hgnc_dict_v1 |
| gene | MAP7 | “RNA-Seq data showed that the genes responsible for microtubule organization such as TUBB, BUB1B, TUBG2, TUBGCP6, TPX2, and MAP7 were significantly downregulated.” | 0.98 | hgnc_dict_v1 |
| gene | UHRF1 | “Several epigenetic modulators such as UHRF1, HDAC7, and DNMT1 were also considerably downregulated, and this effect was associated with significant upregulation of various proapoptotic genes including CASP3, TNF-α, CASP7, and CDKN1A (p21).” | 0.98 | hgnc_dict_v1 |
| gene | HDAC7 | “Several epigenetic modulators such as UHRF1, HDAC7, and DNMT1 were also considerably downregulated, and this effect was associated with significant upregulation of various proapoptotic genes including CASP3, TNF-α, CASP7, and CDKN1A (p21).” | 0.98 | hgnc_dict_v1 |
| gene | DNMT1 | “Several epigenetic modulators such as UHRF1, HDAC7, and DNMT1 were also considerably downregulated, and this effect was associated with significant upregulation of various proapoptotic genes including CASP3, TNF-α, CASP7, and CDKN1A (p21).” | 0.98 | hgnc_dict_v1 |
| gene | CASP3 | “Several epigenetic modulators such as UHRF1, HDAC7, and DNMT1 were also considerably downregulated, and this effect was associated with significant upregulation of various proapoptotic genes including CASP3, TNF-α, CASP7, and CDKN1A (p21).” | 0.98 | hgnc_dict_v1 |
| gene | CASP7 | “Several epigenetic modulators such as UHRF1, HDAC7, and DNMT1 were also considerably downregulated, and this effect was associated with significant upregulation of various proapoptotic genes including CASP3, TNF-α, CASP7, and CDKN1A (p21).” | 0.98 | hgnc_dict_v1 |
| gene | CDKN1A | “Several epigenetic modulators such as UHRF1, HDAC7, and DNMT1 were also considerably downregulated, and this effect was associated with significant upregulation of various proapoptotic genes including CASP3, TNF-α, CASP7, and CDKN1A (p21).” | 0.98 | hgnc_dict_v1 |
| gene | RAD51 | “Likewise, damaged DNA repair genes such as RAD51, RAD52, and DDB2 were also significantly downregulated.” | 0.98 | hgnc_dict_v1 |
| gene | RAD52 | “Likewise, damaged DNA repair genes such as RAD51, RAD52, and DDB2 were also significantly downregulated.” | 0.98 | hgnc_dict_v1 |
| gene | DDB2 | “Likewise, damaged DNA repair genes such as RAD51, RAD52, and DDB2 were also significantly downregulated.” | 0.98 | hgnc_dict_v1 |
| phenotype | hepatocellular carcinoma | “Gene Ontology and Expression Studies of Strigolactone Analogues on a Hepatocellular Carcinoma Cell Line.” | 0.98 | phenotype_alias_lexicon_v2 |